CBO2228 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBO2228

Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa. (538 aa)

Predicted Functional Partners:

CBO1351

0.603

CBO2050

0.596

CBO2054

0.585

CBO2705

0.552

CBO3099

0.542

CBO3107

0.537

CBO2710

0.498

CBO3328

0.446

CBO0043A

0.437

CBO1626

0.433

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO0043A	CBO2050	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	0.738
CBO0043A	CBO2054	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	Probable glycosyl transferase.	0.743
CBO0043A	CBO2228	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	0.437
CBO1351	CBO2228	Putative exported protein.	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	0.603
CBO1626	CBO2050	Putative membrane protein.	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	0.735
CBO1626	CBO2054	Putative membrane protein.	Probable glycosyl transferase.	0.742
CBO1626	CBO2228	Putative membrane protein.	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	0.433
CBO2050	CBO0043A	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	0.738
CBO2050	CBO1626	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	Putative membrane protein.	0.735
CBO2050	CBO2228	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	0.596
CBO2054	CBO0043A	Probable glycosyl transferase.	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	0.743
CBO2054	CBO1626	Probable glycosyl transferase.	Putative membrane protein.	0.742
CBO2054	CBO2228	Probable glycosyl transferase.	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	0.585
CBO2228	CBO0043A	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Similar to Clostridium tetani conserved protein ctc01787 SWALL:Q893M8 (EMBL:AE015942) (477 aa) fasta scores: E(): 5.7e-98, 58.62 38d in 481 aa, and to Bacillus anthracis conserved domain protein ba1754 SWALL:Q81SB1 (EMBL:AE017029) (366 aa) fasta scores: E(): 9.9e-18, 27.1 id in 380 aa.	0.437
CBO2228	CBO1351	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Putative exported protein.	0.603
CBO2228	CBO1626	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Putative membrane protein.	0.433
CBO2228	CBO2050	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.	0.596
CBO2228	CBO2054	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Probable glycosyl transferase.	0.585
CBO2228	CBO2705	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Putative glycosyl transferase.	0.552
CBO2228	CBO2710	Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.	Putative glycosyl transferase.	0.498

page 1 of 2

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About