Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2230Conserved hypothetical protein. (113 aa)    
Predicted Functional Partners:
CBO2231
Putative oligopeptide transporter.
 
     0.937
CBO2084
Conserved hypothetical protein; CDS is truncated 37 residues at the C-terminus relative to its closest fasta match.
  
     0.621
CBO3381
Putative membrane protein.
  
     0.589
CBO3328
Putative phosphatase.
  
     0.548
CBO1868
Probable transporter.
  
     0.546
CBO3343
Putative Xaa-his dipeptidase.
 
     0.540
pepD-3
Putative aminoacyl-histidine dipeptidase.
       0.538
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
  
     0.526
gerAC
Spore germination protein.
  
     0.510
CBO0485
Similar to Clostridium tetani conserved protein ctc00792 SWALL:Q897E8 (EMBL:AE015938) (343 aa) fasta scores: E(): 1e-48, 40.81 38d in 343 aa.
  
     0.466
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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