STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2239Putative ATP-binding transport protein. (239 aa)    
Predicted Functional Partners:
CBO2238
Putative transport system protein.
 
 
 0.998
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.695
CBO1358
ABC transporter, ATP-binding protein.
 
    
0.659
CBO1678
Oligopeptide transport system, ATP-binding protein.
 
   
0.562
CBO0845
Putative ABC transporter, membrane protein.
 
  
 0.487
CBO1952
ABC transporter, ATP-binding/permease protein.
 
     
0.481
sagH
Putative cytolysin ABC transporter; Similar to Streptococcus iniae SagH sagH SWALL:Q8GP11 (EMBL:AF465842) (375 aa) fasta scores: E(): 1e-37, 30.58 38d in 376 aa.
 
  
 0.472
CBO1051
Composite ABC transporter, ATP-binding/permease protein.
 
     
0.454
CBO2278
ABC transporter, ATP-binding transmembrane protein.
 
     
0.442
CBO2679
Putative UDP-glucose 4-epimerase.
  
     0.414
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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