STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2256Metallo-beta-lactamase superfamily protein. (242 aa)    
Predicted Functional Partners:
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
  
 0.807
CBO2131
Conserved hypothetical protein.
  
    0.565
CBO2132
Conserved hypothetical protein.
  
     0.561
CBO0750
Putative transposase (partial); Partial CDS. Similar to internal regions of several transposases including Thiobacillus ferrooxidans resolvase-like protein SWALL:O33828 (EMBL:U73041) (859 aa) fasta scores: E(): 4.3e-18, 42.74 38d in 124 aa, and to Streptomyces fradiae transposase for transposon tn4556 tnpA SWALL:TNPA_STRFR (SWALL:P20189) (892 aa) fasta scores: E(): 6.4, 26.44 38d in 121 aa; was marked partial.
 
     0.545
CBO0560
Putative membrane protein.
  
   0.540
CBO1996
Putative endoribonuclease.
 
    0.518
CBO2255
Acetyltransferase (GNAT) family protein.
       0.511
CBO1580
Putative oxidoreductase.
  
 0.510
CBO0856
Putative acetyltransferase.
  
     0.494
CBO0620
TetR-family transcriptional regulator.
  
    0.454
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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