STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2268Conserved hypothetical protein. (333 aa)    
Predicted Functional Partners:
CBO0856
Putative acetyltransferase.
  
     0.726
CBO1013
Putative cyclase.
  
     0.635
CBO0778
Putative membrane protein.
  
     0.605
CBO1781
Putative exported protein; No significant database matches.
  
    0.574
CBO2269
Hypothetical protein; No significant database matches. Doubtful CDS, poor translational start site.
       0.563
CBO3141
Putative membrane protein; No significant database matches.
  
     0.560
CBO0855
MerR-family transcriptional regulator.
  
    0.548
CBO2270
Hypothetical protein; N-terminus is similar to the N-terminal region of Clostridium tetani iron-sulfur flavoprotein CTC01006 SWALL:Q896J7 (EMBL:AE015939) (185 aa) fasta scores: E(): 2e-12, 44.18 38d in 129 aa. Weakly similar to the full length Escherichia coli putative NAD(P)H oxidoreductase b0901 SWALL:YCAK_ECOLI (SWALL:P43340) (196 aa) fasta scores: E(): 0.008, 22.34 38d in 188 aa.
       0.548
CBO2296
Putative membrane protein.
  
     0.514
CBO0251
Putative metallo-beta-lactamase superfamily protein; Similar to Serratia fonticola beta-lactamase SfhI SWALL:Q9RMI1 (EMBL:AF197943) (234 aa) fasta scores: E(): 0.086, 25.4 38d in 248 aa, and to Aeromonas veronii metallo-B-lactamase ImiS SWALL:O31272 (EMBL:Y10415) (255 aa) fasta scores: E(): 0.45, 22.26 38d in 247 aa.
  
     0.500
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.