STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2273Hypothetical protein; Similar to the N-terminal region of Bacillus subtilis hypothetical protein YmaF or bsu17320 SWALL:YMAF_BACSU (SWALL:O31794) (137 aa) fasta scores: E(): 0.0051, 30.3 38d in 99 aa; Highly similar to CBO0900 (82.3 38d), CBO1594 (85.5 38d) and CBO12267 (89.9 0d). (110 aa)    
Predicted Functional Partners:
CBO3364
Conserved hypothetical protein.
  
     0.609
CBO3396
Putative CopG-family transcriptional regulator.
  
   
 0.534
CBO0408
Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa.
  
     0.474
CBO0390
Putative forespore-specific lipoprotein; Similar to Bacillus subtilis lipoprotein yhcn precursor yhcn or bsu09150 SWALL:YHCN_BACSU (SWALL:P54598) (189 aa) fasta scores: E(): 2e-08, 27.89 38d in 190 aa.
  
     0.436
CBO1012
MarR-family transcriptional regulator.
  
     0.427
CBO1315
Putative membrane protein.
  
     0.404
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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