STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2280AraC family regulatory protein. (319 aa)    
Predicted Functional Partners:
CBO2279
ABC transporter, ATP-binding transmembrane protein.
 
    0.852
CBO2278
ABC transporter, ATP-binding transmembrane protein.
 
    0.843
CBO2079
Putative transmembrane protein.
 
    0.730
CBO0685
AraC-family transcriptional regulator.
  
     0.715
CBO2078
Putative transmembrane protein.
 
     0.700
CBO2077
Conserved hypothetical protein (partial); This CDS is similar to internal region of the listed database matches; was marked partial.
 
     0.684
eutP
Putative ethanolamine utilization protein; Belongs to the EutP/PduV family.
 
   
 0.591
CBO0564
AraC-family transcriptional regulator.
 
   0.551
CBO1050
Composite ABC transporter, ATP-binding/permease protein.
 
    0.541
rpiB
Similar to Escherichia coli ribose 5-phosphate isomerase B RpiB or b4090 SWALL:RPIB_ECOLI (SWALL:P37351) (149 aa) fasta scores: E(): 2.2e-27, 52.77 38d in 144 aa,and to Clostridium tetani ribose 5-phosphate isomerase ctc00307 SWALL:Q898Y0 (EMBL:AE015936) (149 aa) fasta scores: E(): 1.5e-43, 78.47 38d in 144 aa.
      
 0.539
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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