STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2283ABC transporter, ATP-binding protein. (306 aa)    
Predicted Functional Partners:
CBO2282
Putative membrane protein.
  
 
  0.955
CBO2281
Putative membrane protein; C-terminal region is weakly similar to Bacillus licheniformis bacitracin transport permease protein BcrB SWALL:BCRB_BACLI (SWALL:P42333) (208 aa) fasta scores: E(): 4.2, 20.63 38d in 189 aa. Full length CDS is similar to Clostridium tetani membrane spanning protein CTC01802 SWALL:Q893L6 (EMBL:AE015942) (243 aa) fasta scores: E(): 2.6e-08, 21.77 38d in 248 aa.
  
    0.690
CBO3350
Putative lipoprotein.
 
 
 0.566
CBO2284
Two-component sensor kinase.
 
     0.537
CBO1583
Putative lantibiotic ABC transporter, permease protein.
 
  
 0.510
CBO0778
Putative membrane protein.
 
   0.508
CBO1584
Putative lantibiotic ABC transporter, permease protein.
 
  
 0.495
CBO2285
Two-component response regulator.
     
 0.484
CBO0784
Putative permease.
  
    0.469
CBO0766
ABC transporter, permease protein; Highly similar to downstream CDS CBO0767 (89.9 id).
 
 
 0.444
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.