STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TglPutative transglutaminase. (273 aa)    
Predicted Functional Partners:
CBO2292
Hypothetical protein; No significant database matches.
       0.873
CBO2925
Hypothetical protein; No significant database matches.
  
     0.629
cwlJ
Putative cell wall hydrolase.
  
   
 0.612
CBO0244
Similar to Bacillus subtilis hypothetical protein yrkc or bsu26560 SWALL:YRKC_BACSU (SWALL:P54430) (186 aa) fasta scores: E(): 5.7e-41, 61.45 38d in 192 aa, and to Clostridium tetani conserved protein ctc01899 SWALL:Q893C8 (EMBL:AE015942) (193 aa) fasta scores: E(): 1.1e-40,59.09 38d in 220 aa.
  
    0.563
CBO0677
Conserved hypothetical protein.
  
   
 0.517
tlp
Putative acid-soluble spore protein; Belongs to the Tlp family.
  
   
 0.507
gerAB1
Spore germination protein (partial); Possible gene remnant. Similar to the C-terminal region of Clostridium sporogenes spore germination protein GerAA SWALL:Q8KR40 (EMBL:AY046406) (499 aa) fasta scores: E(): 0.046, 42.59 38d in 54 aa; was marked partial.
  
     0.491
CBO2831
Putative secreted chitodextrinase; Weakly similar to the N-terminal region of Thermoanaerobacter thermosulfurogenes amylopullulanase precursor amyB SWALL:APU_THETU (SWALL:P38536) (1861 aa) fasta scores: E(): 6.8, 21.5 38d in 586 aa.
  
     0.490
gerAB2
Spore germination protein; This CDS is also similar to CBO1974 (65.374 38d. in 361 aa overlap), CBO1978 (50.413 38d. in 363 aa overlap),CBO2796 (36.957 38d. in 368 aa overlap) and to CBO2300 (32.682 38d. in 358 aa overlap).
  
     0.478
gerAB4
Spore germination protein; This CDS is also similar to CBO2796 (77.9 38d. in 367 aa overlap), CBO1974 (35.5 38d. in 360 aa overlap),CBO1978 (36.827 38d. in 353 aa overlap) and to CBO1976 (32.682 38d. in 358 aa overlap).
  
     0.477
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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