Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2295Putative membrane protein. (457 aa)    
Predicted Functional Partners:
CBO2402
UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
 
    0.590
CBO0354
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc01950 SWALL:Q892Y3 (EMBL:AE015942) (509 aa) fasta scores: E(): 4.1e-53, 35.15 38d in 512 aa.
  
     0.579
CBO3123
Conserved hypothetical protein.
  
     0.534
CBO0512
Conserved hypothetical protein.
  
     0.436
CBO3559
Putative transcriptional regulator.
  
     0.431
CBO0988
Putative membrane protein.
  
     0.413
cphB
Cyanophycinase; Similar to Synechococcus elongatus cyanophycinase CphB or tlr2169 SWALL:CPHB_SYNEL (SWALL:Q9F2I8) (322 aa) fasta scores: E(): 3.5e-32, 38.28 38d in 256 aa, and to Clostridium tetani cyanophycinase ctc00281 SWALL:Q899A4 (EMBL:AE015936) (268 aa) fasta scores: E(): 8e-68, 69.58 id in 263 aa; Belongs to the peptidase S51 family.
  
     0.408
CBO2724
Putative dTDP-glucose 4,6-dehydratase.
 
  
 0.402
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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