CBO2334 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBO2334

Hypothetical phage protein. (151 aa)

Predicted Functional Partners:

CBO2332

0.991

CBO2333

0.984

CBO2337

0.981

CBO2342

0.975

CBO2336

0.959

CBO2341

0.927

CBO2331

0.913

CBO2340

0.903

CBO1733

0.863

CBO1743

0.833

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO1733	CBO1743	Putative phage protein.	Putative phage protein.	0.971
CBO1733	CBO2331	Putative phage protein.	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	0.766
CBO1733	CBO2332	Putative phage protein.	Hypothetical phage protein; N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa.	0.977
CBO1733	CBO2333	Putative phage protein.	Hypothetical phage protein.	0.954
CBO1733	CBO2334	Putative phage protein.	Hypothetical phage protein.	0.863
CBO1733	CBO2337	Putative phage protein.	Hypothetical phage protein.	0.940
CBO1733	CBO2340	Putative phage protein.	Hypothetical phage protein.	0.671
CBO1733	CBO2341	Putative phage protein.	Hypothetical phage protein.	0.854
CBO1743	CBO1733	Putative phage protein.	Putative phage protein.	0.971
CBO1743	CBO2331	Putative phage protein.	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	0.705
CBO1743	CBO2333	Putative phage protein.	Hypothetical phage protein.	0.859
CBO1743	CBO2334	Putative phage protein.	Hypothetical phage protein.	0.833
CBO1743	CBO2337	Putative phage protein.	Hypothetical phage protein.	0.849
CBO1743	CBO2341	Putative phage protein.	Hypothetical phage protein.	0.460
CBO1743	CBO2342	Putative phage protein.	Hypothetical phage protein.	0.905
CBO2331	CBO1733	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	Putative phage protein.	0.766
CBO2331	CBO1743	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	Putative phage protein.	0.705
CBO2331	CBO2332	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	Hypothetical phage protein; N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa.	0.960
CBO2331	CBO2333	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	Hypothetical phage protein.	0.827
CBO2331	CBO2334	Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.	Hypothetical phage protein.	0.913