Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2335Hypothetical phage protein; No significant database matches. (110 aa)    
Predicted Functional Partners:
CBO2334
Hypothetical phage protein.
       0.828
CBO2336
Hypothetical phage protein.
       0.828
CBO2337
Hypothetical phage protein.
       0.828
CBO2333
Hypothetical phage protein.
       0.823
CBO2332
Hypothetical phage protein; N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa.
       0.816
CBO2331
Putative tail fiber protein; N-terminal region is similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 6.4e-14, 31.07 id in 280 aa.
       0.786
CBO2329
Hypothetical phage protein.
       0.757
CBO2330
Putative membrane protein; No significant database matches.
       0.757
CBO2338
Puattive membrane protein; N-terminal region is weakly similar to Clostridium perfringens hypothetical protein CPE1047 SWALL:Q8XLJ4 (EMBL:AP003189) (149 aa) fasta scores: E(): 0.17, 28.48 id in 158 aa.
       0.580
CBO2339
Hypothetical phage protein; Internal region is similar to the N-terminal region of Lactococcus lactis bacteriophage TP901-1 tape measure protein Tmp SWALL:Q9G097 (EMBL:AF252967) (937 aa) fasta scores: E(): 2.9e-38, 34.52 38d in 562 aa.
       0.568
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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