Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2340Hypothetical phage protein. (145 aa)    
Predicted Functional Partners:
CBO2342
Hypothetical phage protein.
 
  
 0.954
CBO2341
Hypothetical phage protein.
 
     0.941
CBO2337
Hypothetical phage protein.
 
  
 0.904
CBO2334
Hypothetical phage protein.
 
  
 0.903
CBO2333
Hypothetical phage protein.
 
  
 0.896
CBO2332
Hypothetical phage protein; N-terminus is weakly similar to the N-terminal region of Bacillus subtilis hypothetical protein BSU25970 SWALL:YQCA_BACSU (SWALL:P45936) (192 aa) fasta scores: E(): 0.0063, 24.52 38d in 159 aa.
 
  
 0.885
CBO2336
Hypothetical phage protein.
 
     0.877
CBO2339
Hypothetical phage protein; Internal region is similar to the N-terminal region of Lactococcus lactis bacteriophage TP901-1 tape measure protein Tmp SWALL:Q9G097 (EMBL:AF252967) (937 aa) fasta scores: E(): 2.9e-38, 34.52 38d in 562 aa.
 
    0.818
CBO2350
Phage capsid protein.
 
     0.761
CBO2353
Hypothetical phage protein; N-terminal region is similar to Clostridium tetani conserved protein CTC01089 SWALL:Q896B9 (EMBL:AE015939) (566 aa) fasta scores: E(): 6.5e-24, 25.3 38d in 581 aa.
 
     0.757
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (10%) [HD]