CBO2350 protein (Clostridium botulinum A ATCC 3502)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CBO2350

Phage capsid protein. (350 aa)

Predicted Functional Partners:

CBO2352

0.912

CBO2356

0.829

CBO2341

0.826

CBO2342

0.819

CBO2351

0.799

CBO2340

0.761

CBO2336

0.727

CBO2347

0.677

CBO2344

0.654

CBO0331

0.646

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO0331	CBO2336	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Hypothetical phage protein.	0.637
CBO0331	CBO2340	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Hypothetical phage protein.	0.631
CBO0331	CBO2341	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Hypothetical phage protein.	0.424
CBO0331	CBO2342	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Hypothetical phage protein.	0.525
CBO0331	CBO2350	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Phage capsid protein.	0.646
CBO0331	CBO2352	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	Hypothetical phage protein.	0.475
CBO2336	CBO0331	Hypothetical phage protein.	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	0.637
CBO2336	CBO2340	Hypothetical phage protein.	Hypothetical phage protein.	0.877
CBO2336	CBO2341	Hypothetical phage protein.	Hypothetical phage protein.	0.866
CBO2336	CBO2342	Hypothetical phage protein.	Hypothetical phage protein.	0.861
CBO2336	CBO2344	Hypothetical phage protein.	Hypothetical phage protein; No significant database matches.	0.434
CBO2336	CBO2350	Hypothetical phage protein.	Phage capsid protein.	0.727
CBO2336	CBO2352	Hypothetical phage protein.	Hypothetical phage protein.	0.519
CBO2340	CBO0331	Hypothetical phage protein.	Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe1562 SWALL:Q8XK41 (EMBL:AP003191) (169 aa) fasta scores: E(): 1.6e-23, 40.52 38d in 153 aa; Also similar to CBO0335 (34.4 38d) and CBO0337 (42.6 38d).	0.631
CBO2340	CBO2336	Hypothetical phage protein.	Hypothetical phage protein.	0.877
CBO2340	CBO2341	Hypothetical phage protein.	Hypothetical phage protein.	0.941
CBO2340	CBO2342	Hypothetical phage protein.	Hypothetical phage protein.	0.954
CBO2340	CBO2344	Hypothetical phage protein.	Hypothetical phage protein; No significant database matches.	0.724
CBO2340	CBO2347	Hypothetical phage protein.	Hypothetical phage protein; No significant database matches.	0.683
CBO2340	CBO2350	Hypothetical phage protein.	Phage capsid protein.	0.761