Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2355Terminase large subunit. (448 aa)    
Predicted Functional Partners:
CBO1721
Terminase small subunit.
 
  
 0.963
CBO2356
Phage terminase small subunit.
  
 0.946
CBO1723
Portal protein.
 
  
 0.933
CBO2353
Hypothetical phage protein; N-terminal region is similar to Clostridium tetani conserved protein CTC01089 SWALL:Q896B9 (EMBL:AE015939) (566 aa) fasta scores: E(): 6.5e-24, 25.3 38d in 581 aa.
     
 0.798
CBO2354
Hypothetical phage protein.
       0.792
CBO2352
Hypothetical phage protein.
 
     0.776
CBO1733
Putative phage protein.
 
  
 0.771
CBO1727
Scaffold protein.
 
   
 0.770
CBO1741
Putative phage protein.
 
  
 0.766
CBO1724
Putative prophage head protein.
 
     0.762
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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