STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2371Hypothetical phage protein. (140 aa)    
Predicted Functional Partners:
CBO2370
Hypothetical phage protein.
       0.873
CBO2372
Hypothetical phage protein; No significant database matches. Doubtful CDS.
       0.773
CBO2369
Hypothetical phage protein; No significant database matches.
       0.669
CBO2368A
Hypothetical phage protein; No significant database matches.
       0.649
CBO2373
Hypothetical phage protein.
       0.626
CBO2379
Hypothetical phage protein.
 
    0.609
abrB-2
SpoVT/AbrB family regulatory protein.
       0.594
CBO2376
N-terminal region is similar to Bacillus subtilis RNA polymerase sigma-E factor precursor SigE or SpoIIGB or BSU15320 SWALL:RPSE_BACSU (SWALL:P06222) (239 aa) fasta scores: E(): 7.1e-08, 32.95 38d in 176 aa.
       0.587
CBO2375
Hypothetical phage protein; No significant database matches.
       0.584
CBO2368
Hypothetical phage protein; No significant database matches.
       0.545
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.