STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2379Hypothetical phage protein. (286 aa)    
Predicted Functional Partners:
CBO2378
Putative DNA replication protein.
 
  
 0.859
CBO2377
Hypothetical phage protein; No significant database matches.
       0.723
CBO2380
Putative membrane protein; No significant database matches.
       0.671
abrB-2
SpoVT/AbrB family regulatory protein.
 
     0.641
CBO2384
Hypothetical phage protein.
 
     0.634
CBO2371
Hypothetical phage protein.
 
     0.595
CBO2376
N-terminal region is similar to Bacillus subtilis RNA polymerase sigma-E factor precursor SigE or SpoIIGB or BSU15320 SWALL:RPSE_BACSU (SWALL:P06222) (239 aa) fasta scores: E(): 7.1e-08, 32.95 38d in 176 aa.
       0.574
CBO2375
Hypothetical phage protein; No significant database matches.
       0.570
CBO2373
Hypothetical phage protein.
  
    0.555
CBO2362
Hypothetical phage protein.
 
    0.534
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.