Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2391Putative DNA-binding phage protein. (144 aa)    
Predicted Functional Partners:
CBO0604
Putative transcriptional regulator.
  
     0.627
CBO2389
BRO family protein; N-terminus is similar to the N-terminal region of Listeria innocua hypothetical protein LIN2418 SWALL:Q928W4 (EMBL:AL596172) (256 aa) fasta scores: E(): 1e-11, 31.14 id in 228 aa.
 
   
 0.536
CBO2390
Putative DNA-biding phage protein.
       0.526
CBO2186
Putative DNA-binding protein; N-terminus is similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE0727 SWALL:Q8XMG2 (EMBL:AP003187) (268 aa) fasta scores: E(): 2.8e-10, 65.15 38d in 66 aa. Possible gene remnant.
  
     0.524
CBO2388
Hypothetical phage protein; Similar to the N-terminal region of Clostridium acetobutylicum hypothetical protein CAC1944 SWALL:Q97HR4 (EMBL:AE007699) (146 aa) fasta scores: E(): 1.3e-12,44.53 38d in 119 aa.
       0.407
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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