STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2575Ornithine cyclodeaminase/mu-crystallin family protein. (329 aa)    
Predicted Functional Partners:
prdF
Putative proline racemase; Belongs to the proline racemase family.
 
  
 0.887
CBO2233
Putative threonine aldolase.
      
 0.660
tdcB
Threonine dehydratase catabolic.
  
  
 0.653
arcC
Putative carbamate kinase; Belongs to the carbamate kinase family.
      
 0.620
arcB
Ornithine carbamoyltransferase chain I; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.549
agcS-5
Putative amino acid transporter protein.
       0.503
arcA1
Arginine deiminase; Similar to Enterococcus faecalis arginine deiminase ArcA or ef0104 SWALL:Q93K67 (EMBL:AJ312276) (408 aa) fasta scores: E(): 1.6e-80, 55.06 38d in 405 aa, and to Bacillus licheniformis arginine deiminase ArcA SWALL:ARCA_BACLI (SWALL:O86131) (413 aa) fasta scores: E(): 3.7e-77, 51.22 id in 408 aa; Also similar to CBO1587 (57.03 38d).
      
 0.467
arcA2
Arginine deiminase; Also similar to CBO0065 (57.03 38d).
      
 0.467
CBO2460
Putative membrane protein.
 
     0.454
CBO3180
Putative membrane protein.
 
     0.452
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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