STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2588Putative acetyltransferase. (170 aa)    
Predicted Functional Partners:
CBO2591
Hypothetical protein; Poor database matches. C-terminus is weakly similar to the C-terminal region of Methanococcus maripaludis seryl-tRNA synthetase SerS or MMP0879 SWALL:SYS_METMP (SWALL:O30520) (514 aa) fasta scores: E(): 5.2e-12, 22.86 id in 363 aa.
  
   0.794
CBO2589
Putative acyl carrier protein.
       0.773
CBO2590
Putative lipid modification protein.
       0.773
CBO2592
C-terminal region is weakly similar to Bacillus brevis 4'-phosphopantetheinyl transferase Gsp SWALL:GSP_BACBR (SWALL:P40683) (237 aa) fasta scores: E(): 2.2e-06, 28.57 38d in 203 aa. Possible alternative translational start site.
       0.727
CBO2587
Putative AMP-binding enzyme; Similar to an internal region of Bacillus licheniformis bacitracin synthetase 1 BacA SWALL:BACA_BACLI (SWALL:O68006) (5255 aa) fasta scores: E(): 4.3e-49, 33.15 38d in 561 aa.
     
 0.663
CBO2585
Putative 3-oxoacyl-[acyl-carrier-protein] synthase III protein.
       0.544
CBO2586
Putative thioesterase.
       0.543
CBO2582
Putative phosphoenolpyruvate synthase; N-terminus is similar to the N-terminal region of Escherichia coli phosphoenolpyruvate synthase PpsA or Pps or b1702 SWALL:PPSA_ECOLI (SWALL:P23538) (791 aa) fasta scores: E(): 1.8e-22, 36.79 38d in 337 aa. Full length CDS is similar to Bacillus cereus phosphoenolpyruvate synthase BC3087 SWALL:Q81BR3 (EMBL:AE017008) (868 aa) fasta scores: E(): 6.8e-35, 29.98 38d in 877 aa.
  
    0.532
CBO0848
Conserved hypothetical protein.
  
     0.528
CBO2581
Putative transporter protein.
       0.519
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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