STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO2602Putative malate/lactate dehydrogenase; Weakly similar to many L-lactate dehydrogenases. Possible alternative translational start sites downstream of the current one. (407 aa)    
Predicted Functional Partners:
CBO2601
Putative transferase; No significant database matches to the full length CDS.
 
   
 0.922
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
 
 0.918
CBO2603
Hypothetical protein; No significant database matches to the full length CDS. C-terminal region is similar to many proteins,including Lactobacillus plantarum hypothetical protein LP_0490 SWALL:Q88Z69 (EMBL:AL935253) (184 aa) fasta scores: E(): 0.011, 26.34 38d in 186 aa. Possible alternative translational start sites.
 
    0.907
pykF
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.889
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
  
  
 0.883
atpA-2
ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 0.850
CBO0418
Putative aconitase; Similar to Clostridium acetobutylicum aconitase a cac0971 SWALL:Q97KE8 (EMBL:AE007613) (642 aa) fasta scores: E(): 4e-183, 76.01 38d in 642 aa.
  
 0.838
groEL
60 kDa chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
   
 0.753
CBO2819
Putative iron-sulfur oxidoreductase.
  
  
 0.750
CBO0419
Similar to Coccidioides immitis isocitrate dehydrogenase IcdH SWALL:Q8X1D0 (EMBL:AF439265) (347 aa) fasta scores: E(): 2e-58, 51.35 38d in 333 aa.
  
 0.705
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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