Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2603Hypothetical protein; No significant database matches to the full length CDS. C-terminal region is similar to many proteins,including Lactobacillus plantarum hypothetical protein LP_0490 SWALL:Q88Z69 (EMBL:AL935253) (184 aa) fasta scores: E(): 0.011, 26.34 38d in 186 aa. Possible alternative translational start sites. (351 aa)    
Predicted Functional Partners:
CBO2602
Putative malate/lactate dehydrogenase; Weakly similar to many L-lactate dehydrogenases. Possible alternative translational start sites downstream of the current one.
 
    0.907
CBO2601
Putative transferase; No significant database matches to the full length CDS.
 
     0.885
CBO2604
Conserved hypothetical protein; Similar to Clostridium acetobutylicum predicted metal-dependent phosphoesterase CAC1092 SWALL:Q97K29 (EMBL:AE007625) (274 aa) fasta scores: E(): 3.9e-51,52.38 38d in 273 aa. CDS contains a putative rare AUU translation start codon.
       0.534
CBO1597
Conserved hypothetical protein.
  
  
 0.509
CBO3324
Conserved hypothetical protein.
 
     0.442
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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