Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2610DedA family membrane protein. (245 aa)    
Predicted Functional Partners:
CBO2612
Putative iron-sulfur protein.
 
   
 0.931
CBO2614
Putative glycosyl transferase.
 
   
 0.925
CBO2611
DedA family membrane protein; Similar to Clostridium perfringens hypothetical protein CPE1612 SWALL:Q8XJZ1 (EMBL:AP003191) (217 aa) fasta scores: E(): 9e-33, 48.84 38d in 217 aa. CDS is extended at the C-terminus in comparison to orthologues,possible frame shift mutation in the C-terminal region.
 
    
0.834
CBO2613A
Hypothetical protein; N-terminus is similar to thye N-terminal region of Streptomyces coelicolor hypothetical protein SCO3464 or SCE46.21 SWALL:Q9RKG8 (EMBL:AL939116) (210 aa) fasta scores: E(): 1.1e-13, 30.92 38d in 194 aa.
 
     0.813
CBO2613
Hypothetical protein; No significant database matches.
 
     0.784
CBO1107
Putative lipoprotein.
 
  
 0.723
CBO0845
Putative ABC transporter, membrane protein.
      
 0.681
CBO0846
ABC transporter, ATP-binding protein.
      
 0.681
CBO0847
DNA-binding protein.
      
 0.681
CBO1372
Putative ferric uptake regulatory protein.
      
 0.681
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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