STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2707Putative capsular polysaccharide synthesis protein; Weakly similar to the mentioned database matches. (473 aa)    
Predicted Functional Partners:
CBO2706
Putative asparagine synthetase.
  
  
0.678
CBO2705
Putative glycosyl transferase.
 
     0.658
CBO2708
Hypothetical protein; Note the database similarities are weak and only to the C-terminal region.
  
    0.634
CBO2715
Probable DTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.607
CBO2704
Putative membrane protein.
       0.595
CBO2710
Putative glycosyl transferase.
 
     0.512
CBO2703
Putative glycosyl transferase.
 
     0.480
CBO2685
UDP-galactopyranose mutase.
  
  
 0.469
CBO2702
Putative glycosyl transferase.
  
  
 0.456
CBO2718
Glucose-1-phosphate cytidylyltransferase.
  
 
 0.455
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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