STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2726Putative glycosyl transferase; Similar to the N-terminal region of Clostridium acetobutylicum glycosyltransferase fused to TPR-repeat domain CAC3308 SWALL:Q97E12 (EMBL:AE007827) (593 aa) fasta scores: E(): 7e-26, 32.49 38d in 514 aa. (473 aa)    
Predicted Functional Partners:
CBO2729
Putative glycosyltransferase; Similar to Clostridium acetobutylicum glycosyltransferase fused to TRP-repeat domain cac3308 SWALL:Q97E12 (EMBL:AE007827) (593 aa) fasta scores: E(): 3.7e-26, 28.1 38d in 612 aa. CDS is extended at the C-terminus in comparison to C. acetobutylicum protein.
 
    
0.848
CBO2727
Conserved hypothetical protein.
       0.784
CBO2728
Conserved hypothetical protein.
  
    0.782
CBO2725
Polysaccharide biosynthesis protein; Similar to the C-terminal region of Staphylococcus aureus capsular polysaccharide biosynthesis protein CapD SWALL:CAPD_STAAU (SWALL:P39853) (599 aa) fasta scores: E(): 3e-31, 37.5 38d in 336 aa, and to the full length Clostridium acetobutylicum predicted nucleoside-diphosphate sugar epimerase CAC2194 SWALL:Q97H20 (EMBL:AE007719) (340 aa) fasta scores: E(): 3.2e-81, 68.03 38d in 341 aa.
  
  
 0.712
CBO2724
Putative dTDP-glucose 4,6-dehydratase.
  
 
 0.527
fliD
Flagellar hook-associated protein; C-terminal region is similar to Bacillus halodurans flagellar hook-associated protein 2 FliD or BH3614 SWALL:FLID_BACHD (SWALL:Q9K6W0) (532 aa) fasta scores: E(): 2.1e-14, 27.55 38d in 508 aa. Full length CDS is similar to Clostridium acetobutylicum flagellar hook-associated protein CAC2205 SWALL:Q97H10 (EMBL:AE007721) (638 aa) fasta scores: E(): 1e-23, 27.36 id in 826 aa.
  
    0.484
CBO2730
Flagellin; Highly similar to the upstream CDS CBO2731 (98.9 id).
  
    0.466
cheN
Chemotaxis protein CheA.
   
    0.465
CBO2766A
Putative glucose translocase.
  
  
 0.449
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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