Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2776Conserved hypothetical protein. (429 aa)    
Predicted Functional Partners:
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
       0.657
CBO3385
Putative phosphopeptide-binding membrane protein.
   
 
 0.565
CBO1039
Putative heavy metal transporter.
 
   0.489
CBO0408
Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa.
  
     0.486
CBO3559
Putative transcriptional regulator.
  
     0.457
CBO2505
Putative protein phosphatase.
  
 
 0.445
CBO3211
Conserved hypothetical protein.
 
     0.434
CBO2925
Hypothetical protein; No significant database matches.
  
     0.424
CBO1482
Hypothetical protein; No significant database matches.
 
     0.415
CBO0338
Putative accessory gene regulator protein B; Similar to Clostridium perfringens hypothetical protein Cpe1561 SWALL:Q8XK42 (EMBL:AP003191) (214 aa) fasta scores: E(): 8.7e-24, 35.92 38d in 206 aa.
  
     0.408
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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