Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2791Putative membrane protein. (183 aa)    
Predicted Functional Partners:
CBO2787
Putative membrane protein.
 
     0.747
CBO2062
Putative membrane protein.
  
     0.477
CBO2790
GntR-family transcriptional regulator.
       0.475
CBO2788
Putative membrane protein.
       0.460
CBO2789
ABC transporter ATP-binding protein.
       0.460
CBO0930
Similar to N-terminal regions of many MerR-family transcriptional regulators including Clostridium acetobutylicum transcriptional regulator, merr family cap0178 SWALL:Q97TD4 (EMBL:AE001438) (123 aa) fasta scores: E(): 0.00041, 36.97 38d in 119 aa.
  
     0.422
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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