Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gerAA-2Spore germination protein. (495 aa)    
Predicted Functional Partners:
gerAB
Spore germination protein.
 
  
 0.973
gerAC-2
Spore germination protein.
 
  
 0.956
CBO0125
Similar to Bacillus cereus spore germination protein GerlC SWALL:Q93N68 (EMBL:AF387344) (390 aa) fasta scores: E(): 1.8e-14, 27.36 38d in 402 aa, and to Clostridium tetani spore germination protein A3 ctc00287 SWALL:Q898Z9 (EMBL:AE015936) (394 aa) fasta scores: E(): 1.6e-56, 37.72 38d in 395 aa.
 
  
 0.912
CBO0124
Similar to Bacillus subtilis spore germination protein A2 GerAb or GerA2 or bsu33060 SWALL:GRAB_BACSU (SWALL:P07869) (365 aa) fasta scores: E(): 4.9e-24, 27.92 id in 351 aa, and to Clostridium tetani spore germination protein A2 ctc00286 SWALL:Q899A0 (EMBL:AE015936) (369 aa) fasta scores: E(): 1.3e-72, 50.13 38d in 363 aa.
 
  
 0.900
gerAB3
Spore germination protein; This CDS is also similar to CBO1976 (50.4 38d. in 363 aa overlap), CBO1974 (49.58 38d. in 361 aa overlap),CBO2300 (36.827 38d. in 353 aa overlap) and to CBO2796 (37.7 38d. in 366 aa overlap).
 
  
 0.899
gerAB1
Spore germination protein (partial); Possible gene remnant. Similar to the C-terminal region of Clostridium sporogenes spore germination protein GerAA SWALL:Q8KR40 (EMBL:AY046406) (499 aa) fasta scores: E(): 0.046, 42.59 38d in 54 aa; was marked partial.
 
  
 0.894
gerAC
Spore germination protein.
 
  
 0.852
spoVAD
Stage V sporulation protein AD.
  
  
 0.840
spoVAC2
Stage V sporulation protein AC.
  
  
 0.800
spoIIR
Similar to Bacillus subtilis stage II sporulation protein R SpoIIR or Ipc-27d or bsu36970 SWALL:SP2R_BACSU (SWALL:P39151) (224 aa) fasta scores: E(): 1.9e-18, 35.71 id in 224 aa, and to Clostridium perfringens stage II sporulation protein R SpoIIR or cpe2211 SWALL:Q8XIB0 (EMBL:AP003193) (209 aa) fasta scores: E(): 1.5e-37,55.34 38d in 206 aa.
 
  
 0.791
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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