STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2807Putative iron-sulfur-binding protein. (213 aa)    
Predicted Functional Partners:
CBO0010
Conserved hypothetical protein; Similar to Methanobacterium thermoautotrophicum hypothetical protein Mth772 SWALL:O26866 (EMBL:AE000856) (375 aa) fasta scores: E(): 2.1e-24, 31.88 38d in 345 aa,and to Methanosarcina mazei iron-sulfur cluster-binding protein mm0611 SWALL:Q8PZ83 (EMBL:AE013286) (376 aa) fasta scores: E(): 7.6e-22, 31.37 38d in 357 aa.
 
 
 0.739
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
  
 
 0.687
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
 
 0.569
rnfB
Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.538
CBO0432
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Moorella thermoacetica formate dehydrogenase beta subunit fdhB SWALL:P77907 (EMBL:U73807) (707 aa) fasta scores: E(): 5.5e-36, 34.26 38d in 502 aa.
  
 
 0.484
ygfK
Pyridine nucleotide-disulfide oxidoreductase.
  
 
 0.484
queG
Similar to Clostridium tetani iron-sulfur cluster-binding protein ctc00352 SWALL:Q898T9 (EMBL:AE015937) (327 aa) fasta scores: E(): 2.3e-75,61.12 38d in 319 aa.
  
  
 0.470
CBO1332
Putative oxidoreductase, electron transfer subunit.
  
  
 0.467
atpG
ATP synthase subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
      
 0.430
CBO3184
Putative pyruvate formate-lyase 2 activating enzyme.
      
 0.430
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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