Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO2832Chitinase. (739 aa)    
Predicted Functional Partners:
CBO1081
Putative chitinase.
 
 0.985
chiD
Chitinase.
 
 0.983
chiA
Chitinase A.
  
  
 
0.925
CBO2105
Putative glycosyl hydrolase; Codons 380 to 501 are similar to codons 115 to 235 of Streptococcus equi immunoreactive protein Se117 SWALL:Q8GLG3 (EMBL:AY137523) (706 aa) fasta scores: E(): 3e-05, 31.14 38d in 122 aa.
 
 
 
 0.584
nagA
N-acetylglucosamine-6-phosphate deacetylase.
 
   
 0.559
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
 
   
 0.533
CBO1432
Putative N-acetylmuramoyl-L-alanine amidase.
     
  0.500
CBO1751
Bacteriophage endolysin (N-acetylmuramoyl-L-alanine amidase); Also similar to CBO1653 (81.6 38d), CBO2325 (86.1 id.), CBO3016 (50.0 38d.).
     
  0.500
CBO3016
N-acetylmuramoyl-L-alanine amidase; Also similar to the prophage encoded CDSs, CBO1751 (50 38d), CBO2325 (48.8 0d.), CBO1653 (55.5 0d.).
     
  0.500
CBO3119
Putative FMN-dependent dehydrogenase.
   
 
 0.500
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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