STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptsMPutative transposase (partial); Pfam match to entry PF00665 rve, Integrase core domain, score 114.4, E-value 2.2e-31. (303 aa)    
Predicted Functional Partners:
ptsH
Putative phosphocarrier protein HPr.
    
 0.934
manA
Similar to Streptococcus mutans mannose-6-phosphate isomerase Pmi or ManA or smu.1839 SWALL:MANA_STRMU (SWALL:Q59935) (316 aa) fasta scores: E(): 1.1e-29, 35.25 id in 312 aa.
 
  
 0.933
CBO2846
Conserved hypothetical protein.
 
   
 0.909
CBO1991
PTS system, IIbc component.
   
  
 0.748
CBO3358
Putative transcriptional regulatory protein.
 
  
 0.738
CBO0655
PTS system, beta-glucoside-specific IIabc component.
  
  
 0.552
bglF
PTS system, beta-glucoside-specific IIabc component.
  
  
 0.502
licA
PTS system, lichenan-specific IIa component.
  
  
 0.489
licB
PTS system, lichenan-specific IIb component.
  
  
 0.476
licC
PTS system, lichenan-specific IIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
  
  
 0.463
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.