STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ssnAPutative amidohydrolase. (442 aa)    
Predicted Functional Partners:
ygeW
Putative aspartate/ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
  
 0.947
CBO2882
Putative peptidase.
 
  
 0.932
ygfK
Pyridine nucleotide-disulfide oxidoreductase.
 
    0.929
xdhAC
In Escherichia coli the molybdenum binding and iron-sulfur binding domains of xanthine dehydrogenase are carried on two separate genes, wheareas in this case they are present on a single gene.
 
  
 0.875
hydA
D-hydantoinase.
 
  
 0.762
dpaL
Diaminopropionate ammonia-lyase.
 
  
 0.738
CBO2892
Conserved hypothetical protein.
 
  
 0.605
xdhB2-2
Xanthine dehydrogenase, FAD-binding subunit.
 
  
 0.535
CBO2890
Conserved hypothetical protein.
 
    0.519
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.518
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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