STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ygeWPutative aspartate/ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. (398 aa)    
Predicted Functional Partners:
ssnA
Putative amidohydrolase.
 
  
 0.947
ygfK
Pyridine nucleotide-disulfide oxidoreductase.
 
    0.941
CBO2882
Putative peptidase.
 
  
 0.925
arcC
Putative carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.920
argH
Argininosuccinate lyase.
 
  
 0.841
xdhAC
In Escherichia coli the molybdenum binding and iron-sulfur binding domains of xanthine dehydrogenase are carried on two separate genes, wheareas in this case they are present on a single gene.
 
    0.838
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.823
dpaL
Diaminopropionate ammonia-lyase.
 
  
 0.806
hydA
D-hydantoinase.
 
  
 0.755
CBO2723
Conserved hypothetical protein.
  
 
 0.741
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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