STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2895Iron compounds ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (322 aa)    
Predicted Functional Partners:
CBO2896
Iron compounds ABC transporter, ATP-binding protein.
 
 
 0.987
CBO2897
Iron compounds ABC transporter,substrate-binding protein.
 
 
 0.955
CBO1337
Putative iron ABC transporter, substrate-binding protein.
 
 
 0.874
CBO1339
Putative iron ABC transporter, ATP-binding protein.
 
 
 0.862
fecE
Putative iron(III) dicitrate ABC transporter,ATP-binding protein.
 
 
 0.856
CBO0303
Putative iron(III) transport system, ATP-binding protein; Similar to Streptococcus agalactiae FhuC fhuC SWALL:Q8VQV6 (EMBL:AF452237) (264 aa) fasta scores: E(): 5.2e-26, 31.9 38d in 257 aa, and to Clostridium tetani putative hemin transport system ATP-binding protein fece fece or ctc00962 SWALL:Q896N8 (EMBL:AE015939) (252 aa) fasta scores: E(): 4.8e-47, 55.15 38d in 252 aa.
 
 
 0.852
CBO0974
Putative iron(III) dicitrate-binding protein.
 
 
 0.810
CBO2894
Conserved hypothetical protein.
 
     0.808
CBO0301
Similar to Clostridium tetani putative iron(III) dicitrate-binding periplasmic protein ctc00960 SWALL:Q896P0 (EMBL:AE015939) (354 aa) fasta scores: E(): 4.9e-30, 32 38d in 350 aa.
 
 
 0.797
fhuC1
Similar to Bacillus subtilis ferrichrome transport ATP-binding protein FhuC or bsu33290 SWALL:FHUC_BACSU (SWALL:P49938) (269 aa) fasta scores: E(): 3.1e-60, 63.29 id in 267 aa.
 
 
 0.784
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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