Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2925Hypothetical protein; No significant database matches. (185 aa)    
Predicted Functional Partners:
cwlJ
Putative cell wall hydrolase.
 
    0.948
CBO1374
Putative gamma-D-glutamyl-L-diamino acid endopeptidase.
  
     0.735
CBO0677
Conserved hypothetical protein.
  
     0.712
Tgl
Putative transglutaminase.
  
     0.629
ypeB
Sporulation protein; Similar to Bacillus subtilis sporulation protein YpeB or JoeB or bsu22920 SWALL:YPEB_BACSU (SWALL:P38490) (450 aa) fasta scores: E(): 1e-27, 26.57 38d in 444 aa,and to Clostridium tetani conserved membrane-associated protein ctc00290 SWALL:Q898Z6 (EMBL:AE015936) (455 aa) fasta scores: E(): 2.7e-92, 57.54 38d in 457 aa.
  
     0.623
CBO0512
Conserved hypothetical protein.
  
     0.610
CBO1191
Conserved hypothetical protein.
  
     0.526
CBO2817
Conserved hypothetical protein.
  
     0.523
CBO1210
Conserved hypothetical protein.
  
     0.515
CBO2923
Cyclic AMP-binding regulatory protein.
       0.507
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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