Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2935Conserved hypothetical protein. (267 aa)    
Predicted Functional Partners:
CBO2936
Conserved hypothetical protein.
 
  
 0.977
CBO2934
Integrase (partial); RNaseP_bact_a.
  
  
 0.733
CBO2937
Putative membrane protein.
       0.671
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
   
 0.663
rmlB
Putative dTDP-glucose 4,6-dehydratase.
  
    0.643
CBO1802
Putative aminotransferase.
   
    0.595
CBO3076
GntR-family transcritional regulator.
   
    0.595
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.582
sigA
RNA polymerase sigma factor (sigma-43); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
     
 0.582
CBO0461
Similar to Clostridium tetani transcriptional regulatory protein ctc00684 SWALL:Q897P7 (EMBL:AE015938) (481 aa) fasta scores: E(): 5.3e-110, 62 38d in 479 aa.
   
    0.518
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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