STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVERod shape-determining protein/stage V sporulation protein E; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (372 aa)    
Predicted Functional Partners:
mreB-2
Rod shape-determining protein.
 
 
 0.937
CBO2999
Penicillin-binding protein.
 
 
 0.921
mreC
Rod shape-determining protein; Involved in formation and maintenance of cell shape.
 
  
 0.887
mreB
Rod shape-determining protein; Similar to Escherichia coli, Escherichia coli O6,Salmonella typhimurium, Salmonella typhi, and Shigella flexneri rod shape-determining protein MreB SWALL:MREB_ECOLI (SWALL:P13519) (347 aa) fasta scores: E(): 4.4e-58, 51.67 38d in 329 aa, and to Clostridium tetani rod shape-determining protein MreB mreb or ctc00318 SWALL:Q898X0 (EMBL:AE015937) (343 aa) fasta scores: E(): 1.4e-89, 76.6 38d in 342 aa.
 
 
 0.874
spoVD
Putative sporulation specific penicillin-binding protein (stage V sporulation protein D).
 
 0.868
CBO3383
Penicillin-binding protein.
 
 0.838
CBO2553
Putative recombinase (partial); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
 
 
 0.827
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.817
mreD
Rod shape determining protein.
  
  
 0.790
divIB
Cell division protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
 
 0.774
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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