Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3025Hypothetical protein; No significant database matches. (84 aa)    
Predicted Functional Partners:
CBO3026
Conserved hypothetical protein; Note the product of this CDS is rich in the amino acids Asn Leu and Ile.
       0.810
CBO3024
Conserved hypothetical protein.
       0.807
CBO3023
Conserved hypothetical protein.
       0.797
CBO3027
Conserved hypothetical protein.
       0.781
CBO3028
Conserved hypothetical protein; Weakly similar to the downstream CDS CB03029.
       0.725
CBO3029
Conserved hypothetical protein; Weakly similar to the upstream CDS CB03028.
       0.722
CBO3030
Similar to Clostridium tetani conserved protein ctc01102 SWALL:Q896A7 (EMBL:AE015939) (110 aa) fasta scores: E(): 9.8e-23, 56.36 38d in 110 aa.
       0.698
CBO3031
Conserved hypothetical protein.
       0.685
CBO3031A
Hypothetical protein; No significant database matches.
       0.685
CBO3032
Hypothetical phage-related membrane protein; Partial similarity to the C-terminus of several bacteriophage tail length determining proteins.
       0.659
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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