STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3045Putative DNA-binding protein. (136 aa)    
Predicted Functional Partners:
CBO0604
Putative transcriptional regulator.
 
     0.697
CBO2186
Putative DNA-binding protein; N-terminus is similar to the N-terminal region of Clostridium perfringens hypothetical protein CPE0727 SWALL:Q8XMG2 (EMBL:AP003187) (268 aa) fasta scores: E(): 2.8e-10, 65.15 38d in 66 aa. Possible gene remnant.
 
     0.562
CBO3044
Similar to several bacteriophage Cro-like regulatory proteins.
       0.505
CBO3041
Hypothetical phage-related protein; Similar to many putative phage replication and chromosome replication proteins.
 
    0.434
CBO3043
Putative DNA-binding protein.
       0.432
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.