CBO3053 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBO3053

Putative sigma-E factor regulatory protein. (142 aa)

Predicted Functional Partners:

rnfB

0.652

rnfG

0.562

CBO3052

0.512

rnfD

0.499

rnfE

0.453

CBO0738

0.453

rnfA

0.443

CBO3458

0.434

rnfC

0.402

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBO0738	CBO3053	CBO0738	CBO3053	Putative membrane protein.	Putative sigma-E factor regulatory protein.	0.453
CBO3052	CBO3053	CBO3052	CBO3053	Hypothetical protein; No significant database matches.	Putative sigma-E factor regulatory protein.	0.512
CBO3053	CBO0738	CBO3053	CBO0738	Putative sigma-E factor regulatory protein.	Putative membrane protein.	0.453
CBO3053	CBO3052	CBO3053	CBO3052	Putative sigma-E factor regulatory protein.	Hypothetical protein; No significant database matches.	0.512
CBO3053	CBO3458	CBO3053	CBO3458	Putative sigma-E factor regulatory protein.	Similar to archaeal and eukaryotic ribosomal protein L14e.	0.434
CBO3053	rnfA	CBO3053	CBO0372	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.443
CBO3053	rnfB	CBO3053	CBO0373	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.652
CBO3053	rnfC	CBO3053	CBO0368	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.402
CBO3053	rnfD	CBO3053	CBO0369	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.499
CBO3053	rnfE	CBO3053	CBO0371	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.453
CBO3053	rnfG	CBO3053	CBO0370	Putative sigma-E factor regulatory protein.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.562
CBO3458	CBO3053	CBO3458	CBO3053	Similar to archaeal and eukaryotic ribosomal protein L14e.	Putative sigma-E factor regulatory protein.	0.434
rnfA	CBO3053	CBO0372	CBO3053	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Putative sigma-E factor regulatory protein.	0.443
rnfA	rnfB	CBO0372	CBO0373	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	0.998
rnfA	rnfC	CBO0372	CBO0368	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.	0.991
rnfA	rnfD	CBO0372	CBO0369	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.	0.994
rnfA	rnfE	CBO0372	CBO0371	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.987
rnfA	rnfG	CBO0372	CBO0370	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family.	0.992
rnfB	CBO3053	CBO0373	CBO3053	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Putative sigma-E factor regulatory protein.	0.652
rnfB	rnfA	CBO0373	CBO0372	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.	Electron transport complex protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.	0.998