Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO3064Putative radical SAM protein; Partially similar to Escherichia coli putative arylsulfatase regulatory protein AslB or AtsB or b3800 SWALL:ASLB_ECOLI (SWALL:P25550) (411 aa) fasta scores: E(): 0.02, 24.22 38d in 355 aa. (455 aa)    
Predicted Functional Partners:
scfA
Hypothetical protein; No significant database matches.
 
 
   0.965
secF
Protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.666
secD
Protein-export membrane protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
     
 0.666
CBO2936
Conserved hypothetical protein.
  
     0.583
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
    0.553
yajC
Putative protein translocase subunit.
 
     0.531
CBO3066
Putative membrane protein.
       0.508
dnaC
DNA replication protein.
  
     0.496
hemZ
Putative oxidase; Partly similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN or b3867 SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 4.5e-11, 24.08 38d in 328 aa.
 
     0.492
CBO3430
Putative exported protein.
  
     0.488
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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