STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3100UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (352 aa)    
Predicted Functional Partners:
CBO3099
Putative glycosyltransferase.
 
  
 0.966
CBO3108
Putative UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 0.965
CBO3101
Putative capsular polysaccharide biosynthesis glycosyl transferase.
 
  
 0.912
CBO3102
Putative glycosyl transferase.
 
  
 0.887
CBO3106
Putative capsular polysaccharide biosynthesis transferase.
 
    0.852
CBO3107
Putative lipopolysaccharide biosynthesis oxidoreductase.
 
  
 0.852
wzx-2
Putative O-antigen flippase.
  
  
 0.793
CBO3097
Putative glycosyltransferase.
 
  
 0.726
wzy-2
Putative oligosaccharide repeat unit polymerase.
       0.724
CBO3104
Putative capsular polysaccharide biosynthesis leucine rich repeat protein; Similar to N-terminal region of Bacillus cereus internalin protein bc0552 SWALL:Q81I65 (EMBL:AE016999) (886 aa) fasta scores: E(): 7.1e-21, 30.16 38d in 358 aa,and to C-terminal region of Clostridium acetobutylicum possible surface protein, responsible for cell interaction, contains cell adhesion domain and chw-repeats cac3279 SWALL:Q97E37 (EMBL:AE007824) (808 aa) fasta scores: E(): 3.3e-26, 35.25 38d in 312 aa.
       0.685
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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