STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wzy-2Putative oligosaccharide repeat unit polymerase. (472 aa)    
Predicted Functional Partners:
CBO3102
Putative glycosyl transferase.
       0.804
CBO3104
Putative capsular polysaccharide biosynthesis leucine rich repeat protein; Similar to N-terminal region of Bacillus cereus internalin protein bc0552 SWALL:Q81I65 (EMBL:AE016999) (886 aa) fasta scores: E(): 7.1e-21, 30.16 38d in 358 aa,and to C-terminal region of Clostridium acetobutylicum possible surface protein, responsible for cell interaction, contains cell adhesion domain and chw-repeats cac3279 SWALL:Q97E37 (EMBL:AE007824) (808 aa) fasta scores: E(): 3.3e-26, 35.25 38d in 312 aa.
       0.755
CBO3101
Putative capsular polysaccharide biosynthesis glycosyl transferase.
       0.750
CBO3100
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.724
CBO3099
Putative glycosyltransferase.
       0.669
wzx-2
Putative O-antigen flippase.
       0.650
CBO3106
Putative capsular polysaccharide biosynthesis transferase.
       0.591
wzy
Putative O-antigen polymerase.
       0.493
CBO3107
Putative lipopolysaccharide biosynthesis oxidoreductase.
       0.417
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.