Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO3111Putative N-acetylmuramoyl-L-alanine amidase; No significant database matches; similar to CBO3110 (42.304 38d. in 955 aa overlap). (967 aa)    
Predicted Functional Partners:
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
       0.529
murA
udp-N-acetylglucosamine 1-carboxyvinyltransferase 1; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.507
CBO3110
Putative N-acetylmuramoyl-L-alanine amidase; No significant database matches; similar to CBO3111 (42.304 38d. in 955 aa overlap).
 
    
0.486
CBO3113
Putative capsular polysaccharide biosynthesis TPR repeats containing protein.
   
   0.452
murAB
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.431
CBO0398
Putative membrane associated peptidase; Similar to Clostridium tetani conserved membrane protein ctc00530 SWALL:Q898D2 (EMBL:AE015937) (345 aa) fasta scores: E(): 3.5e-47, 48.22 38d in 338 aa.
   
   0.412
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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