STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3141Putative membrane protein; No significant database matches. (523 aa)    
Predicted Functional Partners:
CBO3142
ABC transporter ATP-binding protein.
 
     0.965
CBO0778
Putative membrane protein.
  
     0.719
CBO1781
Putative exported protein; No significant database matches.
  
     0.713
CBO0856
Putative acetyltransferase.
  
     0.664
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.646
CBO0929
Conserved hypothetical protein.
  
     0.602
CBO0716
Putative transcriptional regulator (partial); Partial CDS. Similar to the C-terminal region of Clostridium tetani putative transcriptional regulatory protein ctc01439 SWALL:Q894U5 (EMBL:AE015941) (235 aa) fasta scores: E(): 2.1e-12, 41.81 38d in 110 aa; was marked partial.
  
     0.565
CBO2268
Conserved hypothetical protein.
  
     0.560
CBO0544
Putative acetyltransferase.
  
     0.552
CBO1536
Putative transcriptional regulator.
  
     0.550
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.