STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3142ABC transporter ATP-binding protein. (231 aa)    
Predicted Functional Partners:
CBO3141
Putative membrane protein; No significant database matches.
 
     0.965
CBO0778
Putative membrane protein.
 
   0.542
CBO3350
Putative lipoprotein.
 
   0.516
CBO0710
Putative drug resistance ABC-transporter,membrane protein.
 
  
 0.470
CBO0021
Putative ABC transporter, ATP-binding protein; Similar to Bacillus halodurans ABC transporter bh0179 SWALL:Q9KGC5 (EMBL:AP001507) (220 aa) fasta scores: E(): 1.6e-29, 42.13 38d in 216 aa, and to Streptococcus pneumoniae ABC transporter, ATP-binding protein sp0707 SWALL:Q97RT3 (EMBL:AE007379) (215 aa) fasta scores: E(): 3.2e-28, 45.14 38d in 206 aa.
    
0.469
CBO0767
Putative ABC transporter, permease protein; Highly similar to upstream CDS CBO0766 (89.9 38d).
 
   0.459
CBO0766
ABC transporter, permease protein; Highly similar to downstream CDS CBO0767 (89.9 id).
 
   0.454
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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