STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (340 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein.
 0.999
oppB
Oligopeptide ABC transporter, permease protein.
 
 0.999
oppF
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.995
oppA
ABC transporter, oligopeptide-binding protein.
 
 
 0.994
appC
Putative oligopeptide ABC transporter, permease protein.
 
 0.989
CBO1357
ABC transporter, permease protein.
 
 0.988
CBO3264
Putative extracellular solute-binding protein.
 
 
 0.980
CBO1677
Oligopeptide transport system, permease protein.
 
 0.976
appB
Putative oligopeptide ABC transporter, permease protein.
 
 
 0.933
CBO1356
ABC transporter, permease protein.
 
 
 0.933
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.