Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3157Single-stranded DNA binding protein. (233 aa)    
Predicted Functional Partners:
CBO3160
Conserved hypothetical protein.
 
     0.864
CBO2630
Radical SAM superfamily protein.
  
    0.798
dnaE
DNA polymerase III alpha subunit.
   
 
 0.781
priA
Putative primosomal protein n'(replication factor Y); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
   
 
 0.750
CBO0056
Similar to Escherichia coli DNA polymerase III,delta' subunit HolB or b1099 SWALL:HOLB_ECOLI (SWALL:P28631) (334 aa) fasta scores: E(): 1.3e-05, 22.05 id in 263 aa, and to Clostridium tetani DNA polymerase III delta subunit ctc00221 SWALL:Q899F8 (EMBL:AE015936) (322 aa) fasta scores: E(): 1.1e-52, 53.35 38d in 313 aa.
  
 
 
 0.723
CBO0117
Putative peptidoglycan binding protein; Similar to Clostridium tetani conserved protein ctc00280 SWALL:Q899A5 (EMBL:AE015936) (520 aa) fasta scores: E(): 8e-105, 53.07 38d in 520 aa, and to Clostridium acetobutylicum lysm domain containing membrane protein cac2903 SWALL:Q97F50 (EMBL:AE007787) (520 aa) fasta scores: E(): 1.9e-86, 45.76 38d in 520 aa.
 
     0.720
CBO3607
Putative DNA replication protein.
 
     0.718
rpsB
30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
   
  0.707
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.700
CBO3145
Small acid-soluble spore protein.
  
     0.698
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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