Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO3158Conserved hypothetical protein. (165 aa)    
Predicted Functional Partners:
CBO0410
Conserved hypothetical protein; Similar to Clostridium acetobutylicum cobyric acid synthase CobQ cac0961 SWALL:Q97KF8 (EMBL:AE007611) (243 aa) fasta scores: E(): 8.8e-72, 77.08 38d in 240 aa.
  
 
 0.780
CBO3157
Single-stranded DNA binding protein.
     
 0.671
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
  
 0.626
spoVD
Putative sporulation specific penicillin-binding protein (stage V sporulation protein D).
  
  
 0.613
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.596
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.588
pdaB
Probable polysaccharide deacetylase.
       0.564
CBO2553
Putative recombinase (partial); PS00013 Prokaryotic membrane lipoprotein lipid attachment site.
  
  
 0.488
CBO2999
Penicillin-binding protein.
  
  
 0.488
CBO3383
Penicillin-binding protein.
  
  
 0.488
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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