STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdaBProbable polysaccharide deacetylase. (250 aa)    
Predicted Functional Partners:
CBO1297
Putative membrane-associated glycosyl transferase.
 
  
 0.902
CBO1212
Putative chitinase/spore peptidoglycan hydrolase; Belongs to the glycosyl hydrolase 18 family.
 
    
 0.758
asnA
Putative aspartate--ammonia ligase.
      
 0.681
CBO3160
Conserved hypothetical protein.
       0.634
malL
Putative oligo-1,6-glucosidase.
      
 0.584
CBO3158
Conserved hypothetical protein.
       0.564
CBO2133
Putative sortase.
     
 0.521
CBO3157
Single-stranded DNA binding protein.
  
    0.519
CBO2766A
Putative glucose translocase.
  
  
 0.461
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.